Gene detail information of Glyur000631s00022347.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G54130.16.00E-98Josephin family protein
NRXP_004514941.10PREDICTED: ataxin-3 homolog [Cicer arietinum]
Swissprottr|Q9M391|ATX3H_ARATH1.00E-123Ataxin-3 homolog
trEMBLtr|I1JLS5|I1JLS5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G14740.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006318177988212+


Gene family

Gene familysubfamily
Ubiquitin FamilyJosephin


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11863ATXN3, MJD EC:3.4.22.- Protein processing in endoplasmic reticulum map04141


Gene Ontology

molecular_function

GO:0008242  omega peptidase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000631s00022347.1PF02099.12Josephin161704.30E-58


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.857
SRR1783600control13.666
SRR1783602moderate drought stress15.948
SRR1811619moderate drought stress16.021

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.451
DRR006520Root Summer glycyrrhizin high producing strain22.027
DRR006521Root Winter glycyrrhizin high producing strain26.706
DRR006522Root Winter glycyrrhizin high producing strain25.749
DRR006523Root Summer glycyrrhizin low producing strain22.591
DRR006524Root Summer glycyrrhizin low producing strain22.632
DRR006525Leaf Summer glycyrrhizin high producing strain16.871
DRR006526Leaf Summer glycyrrhizin high producing strain16.645

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.684
SRR2868004Drought Stress(Tissue:root)22.921
SRR2967015Control (Tissue:root)25.167

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave25.163
SRR9715740Leave27.353
SRR9715741Leave23.370
SRR9715739Root6.516
SRR9715742Root13.119
SRR9715743Root11.447

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.904
SRR8749028MeJA induced 9h15.940
SRR8749029MeJA induced 9h11.171
SRR8749030Uninduced11.111
SRR8749031Uninduced5.701
SRR8749032Uninduced6.203

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.572
SRR8400027Control-Root23.618

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved