Gene detail information of Glyur000633s00034356.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22500.1 | 4.00E-144 | fatty acid reductase 1 |
| NR | AES88411.2 | 0 | gland-specific fatty acyl-CoA reductase [Medicago truncatula] |
| COG | YP_644868.1 | 8.00E-73 | HAD family hydrolase [Rubrobacter xylanophilus DSM 9941] |
| Swissprot | tr|Q39152|FACR1_ARATH | 5.00E-176 | Fatty acyl-CoA reductase 1 |
| trEMBL | tr|G7JJS1|G7JJS1_MEDTR | 0 | Gland-specific fatty acyl-CoA reductase {ECO:0000313|EMBL:AES88411.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00633 | 29007 | 32168 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13356 | FAR | EC:1.2.1.84 | Cutin, suberine and wax biosynthesis | map00073 |
| Peroxisome | map04146 | |||
| Longevity regulating pathway - worm | map04212 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000633s00034356.1 | PF07993.7 | NAD_binding_4 | 17 | 320 | 1.10E-72 |
| Glyur000633s00034356.1 | PF03015.14 | Sterile | 398 | 489 | 2.40E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.688 |
| SRR1783600 | control | 2.688 |
| SRR1783602 | moderate drought stress | 8.408 |
| SRR1811619 | moderate drought stress | 8.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.024 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.070 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.266 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.702 |
| SRR9715740 | Leave | 1.236 |
| SRR9715741 | Leave | 0.754 |
| SRR9715739 | Root | 2.105 |
| SRR9715742 | Root | 2.478 |
| SRR9715743 | Root | 1.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 82.776 |
| SRR8400027 | Control-Root | 86.762 |