Gene detail

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Gene detail information of Glyur000635s00022446.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66850.1	8.00E-163	mitogen-activated protein kinase kinase kinase 5
NR	XP_003551047.1	0	PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Glycine max]
COG	YP_008089030.1	6.00E-25	Serine/threonine protein kinase [Chthonomonas calidirosea T49]
Swissprot	tr\|Q9CAD5\|YODA_ARATH	3.00E-106	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|I1MVZ9\|I1MVZ9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G20460.1}

Sequence

Transcript Sequence

>Glyur000635s00022446.1
ATGCGTTGGTTACCTTCCCTTTCCTTCTCCACTTCCAATTCTAACTCTTCCTCCTCCGCCGCCGCCGTCGACCACCGNAGGAAGCCGCCGTGGCTCTTCGGGAACTCCTCCAAGAAGCGCACCTACCACGTCGCCGATCACGATTGCAGGTGGCACTCCGCCGACGAACCTCACCCTCTTCCCTTGCCGGAGCTCTCCTCCTCCGCCGCACTGCTCCGCCACAGAGTCGACGGTGACTTCCCTCTTCCCTCGCCCAAGGATGCTCCCTCAGCCTCGCCGGATGCTGCACCCTCCGCCGCCACAGGCTTTCAGATGCGGAGTGTTTTTGCTAGCCAAAGGAACATGGAGCAGGGTGAGAGTAGGTCATCATCAAGGATGGTGCATCAAGATGTGAGTAGTTCTGGAAGGAGTGCTTCTGCTTCAACATCAAGTAGTCCTTTTACAAGTCCCTCAATCAGCCCACAGAGAAGGACAAGTGGTGATTTTGTGCCATATTATTATGTGACTCCCAGAGGGAATCAGTTCTGGTCTGCACCAGAGATGCCAACTTCTGAAGCAGGGTTTCCACCTCCTGCCTTCTTTGATTTATCAGCATTGGGCTCTGATGCTTATTATCCCTCTCCCAATCTAAGTCCACAGGGAAGAAGTCCACATAGACACCTCAGAAGCTCAAGTGGACCTCCATCACCCATGCATGTCATGTTCCCACTTGAGATCTCCACGGCGCGCCACGAAGGCAATGCTCCTCCTATCAGTGTTCACCCGTTACCCTTGCCTCCTCCTGGGGCAGCCTTGCCTTCACCCTCTTCCCATGCTGTGGCTAAGTCTGAATCATTGCCAATGAATAGCCAATGGCAGAAAGGGAAACTTATCGGGCACGGCACGTTTGGGAGTGTTTATGTTGCCACCAATAGAGAAACTGGAGCATTATGTGCAATGAAGGAAGTTGAAATATTTCCTGATGATCCAAAATCTGCAGAGTGNATGAAGCAGTTAGAGCAGGAAATTAAAGTTCTTAGNGATCTTAAACATTCAAACATTGTGCAGTATTATGGCAGTGAAATAGTTGAAGACCGGTTTTATATTTATCTGGAATATGTTCATCCTGGTTCAATAAATAANTACGTCCGTGAACACTGTGGTGCCATAACAGAATCTGTCATTCGGAATTTCACTCGCCATATCCTTTCGGGGTTGGCCTACTTACATAGCAAAAAAACAATTCACAGGGACATCAAAGGGGCTAACTTGCTTGTTGATTCTGCCGGGGTTGTTAAGCTTGCTGATTTTGGGATGGCTAAGCATCTAACTGGATGTGAAACTTATCTTTCTATGAGGGGAAGTCCATATTGGATGGCTCCAGAGCTTATGCAGGCTGTGATGCAAAAGGATAACAGCTCTAACCTAGCTTTTGCTATTGATATTTGGAGTTTGGGTTGTACAATAATTGAAATGTTCACAGGGAAGCCTCCTTGGAGTGAATATGAAGGAGCTGCAGCAATGTTTAAGGTTATGAGGGATACCCCTCCTATACCTGAAACACTGTCACCTGAGGGTAAAGATTTTTTGAGATGCTGCTTTAAAAGAAATCCGGCAGAGCGGCCAACTGCTGCAATGTTACTAGAACATCGATTTTTGAAAAGCTCACAACAGCCAGATGTTTTATCTCCCACCCAGCTGTATAATGGAACAAGCTTCATGGATAAGTCCCATAGTCCCAGTCCCAGAGGACAATCTGAAAATAAACTTCATCTAATGTCTATCCCCAATGCAAAGGTTGCAAAGGGGAAAGCTGCTGAGAGGCGAGGATTTCTCATTCCTTCCTTAGATATTCTCCCTGCATACTGGGCCCAATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00635	32342	36603	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000635s00022446.1	PF00069.20	Pkinase	285	546	1.30E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.535
SRR1783600	control	0.505
SRR1783602	moderate drought stress	0.581
SRR1811619	moderate drought stress	0.596

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.906
DRR006520	Root Summer glycyrrhizin high producing strain	0.853
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.512
DRR006524	Root Summer glycyrrhizin low producing strain	0.559
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.246
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.249

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.105
SRR2868004	Drought Stress(Tissue:root)	6.522
SRR2967015	Control (Tissue:root)	3.880

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.232
SRR9715740	Leave	0.162
SRR9715741	Leave	0.389
SRR9715739	Root	0.266
SRR9715742	Root	0.604
SRR9715743	Root	1.063

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.454
SRR8749028	MeJA induced 9h	0.704
SRR8749029	MeJA induced 9h	0.155
SRR8749030	Uninduced	0.103
SRR8749031	Uninduced	0.185
SRR8749032	Uninduced	0.039

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.089
SRR8400027	Control-Root	2.125