Gene detail information of Glyur000635s00022448.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66870.1 | 1.00E-48 | ASYMMETRIC LEAVES 2-like 1 |
| NR | XP_003538822.1 | 1.15E-91 | PREDICTED: LOB domain-containing protein 36-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9FKZ3|LBD36_ARATH | 1.00E-60 | LOB domain-containing protein 36 |
| trEMBL | tr|K7LN93|K7LN93_SOYBN | 4.00E-92 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G06210.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00635 | 50569 | 51468 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000635s00022448.1 | PF03195.9 | DUF260 | 7 | 106 | 8.40E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.326 |
| SRR1783600 | control | 0.487 |
| SRR1783602 | moderate drought stress | 0.465 |
| SRR1811619 | moderate drought stress | 0.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.241 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.143 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.495 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.363 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.245 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.490 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.360 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.504 |
| SRR2967015 | Control (Tissue:root) | 0.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.055 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.272 |
| SRR8749028 | MeJA induced 9h | 0.728 |
| SRR8749029 | MeJA induced 9h | 0.789 |
| SRR8749030 | Uninduced | 1.459 |
| SRR8749031 | Uninduced | 1.110 |
| SRR8749032 | Uninduced | 0.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.055 |
| SRR8400027 | Control-Root | 0.000 |