Gene detail information of Glyur000636s00035295.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G69170.1 | 1.00E-48 | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein |
| NR | XP_007153485.1 | 0 | hypothetical protein PHAVU_003G039600g [Phaseolus vulgaris] |
| Swissprot | tr|Q94JW8|SPL6_ARATH | 3.00E-62 | Squamosa promoter-binding-like protein 6 |
| trEMBL | tr|V7C5R0|V7C5R0_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW25479.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00636 | 6859 | 12098 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SBP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000636s00035295.1 | PF03110.9 | SBP | 181 | 257 | 1.10E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.679 |
| SRR1783600 | control | 7.598 |
| SRR1783602 | moderate drought stress | 7.111 |
| SRR1811619 | moderate drought stress | 7.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.237 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.034 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.062 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.732 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.724 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.522 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.322 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.338 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.105 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.999 |
| SRR2967015 | Control (Tissue:root) | 9.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.340 |
| SRR9715740 | Leave | 2.938 |
| SRR9715741 | Leave | 2.170 |
| SRR9715739 | Root | 0.682 |
| SRR9715742 | Root | 3.334 |
| SRR9715743 | Root | 2.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.920 |
| SRR8749028 | MeJA induced 9h | 7.383 |
| SRR8749029 | MeJA induced 9h | 6.292 |
| SRR8749030 | Uninduced | 3.742 |
| SRR8749031 | Uninduced | 4.474 |
| SRR8749032 | Uninduced | 4.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.637 |
| SRR8400027 | Control-Root | 5.369 |