Gene detail information of Glyur000640s00024127.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68390.1 | 2.00E-93 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| NR | KHN20747.1 | 5.38E-167 | hypothetical protein glysoja_019064 [Glycine soja] |
| trEMBL | tr|I1L4B0|I1L4B0_SOYBN | 1.00E-166 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G31460.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00640 | 118637 | 123620 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000640s00024127.1 | PF02485.16 | Branch | 87 | 142 | 3.30E-11 |
| Glyur000640s00024127.1 | PF02485.16 | Branch | 142 | 281 | 5.90E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.108 |
| SRR1783600 | control | 0.130 |
| SRR1783602 | moderate drought stress | 0.152 |
| SRR1811619 | moderate drought stress | 0.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.442 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.686 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.415 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.382 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.201 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.284 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.838 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.207 |
| SRR2967015 | Control (Tissue:root) | 1.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.168 |
| SRR9715740 | Leave | 0.123 |
| SRR9715741 | Leave | 0.080 |
| SRR9715739 | Root | 0.051 |
| SRR9715742 | Root | 0.367 |
| SRR9715743 | Root | 0.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.309 |
| SRR8749028 | MeJA induced 9h | 0.145 |
| SRR8749029 | MeJA induced 9h | 0.528 |
| SRR8749030 | Uninduced | 0.096 |
| SRR8749031 | Uninduced | 0.079 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.491 |
| SRR8400027 | Control-Root | 0.425 |