Gene detail information of Glyur000641s00026548.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G04910.1 | 0 | O-fucosyltransferase family protein |
| NR | XP_004496631.1 | 0 | PREDICTED: uncharacterized protein At1g04910-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 0 | Uncharacterized protein At1g04910 |
| trEMBL | tr|V7BBV5|V7BBV5_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW15342.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00641 | 14 | 4533 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000641s00026548.1 | PF10250.4 | O-FucT | 96 | 415 | 1.30E-78 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 28.276 |
| SRR1783600 | control | 28.474 |
| SRR1783602 | moderate drought stress | 20.501 |
| SRR1811619 | moderate drought stress | 20.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.164 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.940 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.372 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.910 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.222 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.232 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.669 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.597 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 29.157 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.463 |
| SRR2967015 | Control (Tissue:root) | 22.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.439 |
| SRR9715740 | Leave | 11.282 |
| SRR9715741 | Leave | 11.031 |
| SRR9715739 | Root | 4.698 |
| SRR9715742 | Root | 16.924 |
| SRR9715743 | Root | 14.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.619 |
| SRR8749028 | MeJA induced 9h | 22.453 |
| SRR8749029 | MeJA induced 9h | 12.033 |
| SRR8749030 | Uninduced | 10.009 |
| SRR8749031 | Uninduced | 7.270 |
| SRR8749032 | Uninduced | 6.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 24.851 |
| SRR8400027 | Control-Root | 26.250 |