Gene detail information of Glyur000642s00034722.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15210.1 | 1.00E-23 | homeobox protein 30 |
| NR | XP_007158652.1 | 1.65E-100 | hypothetical protein PHAVU_002G171000g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LXG0|ZHD8_ARATH | 1.00E-52 | Zinc-finger homeodomain protein 8 |
| trEMBL | tr|V7CP24|V7CP24_PHAVU | 6.00E-101 | Uncharacterized protein {ECO:0000313|EMBL:ESW30646.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00642 | 71123 | 73116 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | zf-HD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000642s00034722.1 | PF04770.7 | ZF-HD_dimer | 55 | 111 | 9.00E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.361 |
| SRR1811619 | moderate drought stress | 0.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.187 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.092 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.385 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.412 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.095 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.095 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.885 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.137 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.377 |
| SRR2967015 | Control (Tissue:root) | 0.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.662 |
| SRR9715740 | Leave | 1.020 |
| SRR9715741 | Leave | 0.445 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.363 |
| SRR9715743 | Root | 0.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.642 |
| SRR8749028 | MeJA induced 9h | 0.612 |
| SRR8749029 | MeJA induced 9h | 0.452 |
| SRR8749030 | Uninduced | 0.055 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.332 |
| SRR8400027 | Control-Root | 1.005 |