Gene detail information of Glyur000644s00020348.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G22540.11.00E-40K-box region and MADS-box transcription factor family protein
NRACU24504.19.90E-86unknown [Glycine max]
Swissprottr|Q9FVC1|SVP_ARATH2.00E-49MADS-box protein SVP
trEMBLtr|C6TNL2|C6TNL2_SOYBN4.00E-86Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G30040.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006446086065856-


Gene family

Gene familysubfamily
Transcription Factors FamilyMIKC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0046983  protein dimerization activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000644s00020348.1PF00319.13SRF-TF9592.20E-23
Glyur000644s00020348.1PF01486.12K-box851555.10E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.214
SRR1783600control0.310
SRR1783602moderate drought stress0.163
SRR1811619moderate drought stress0.212

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.490
DRR006520Root Summer glycyrrhizin high producing strain17.006
DRR006521Root Winter glycyrrhizin high producing strain15.933
DRR006522Root Winter glycyrrhizin high producing strain15.082
DRR006523Root Summer glycyrrhizin low producing strain25.676
DRR006524Root Summer glycyrrhizin low producing strain24.164
DRR006525Leaf Summer glycyrrhizin high producing strain21.727
DRR006526Leaf Summer glycyrrhizin high producing strain21.356

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.122
SRR2868004Drought Stress(Tissue:root)0.396
SRR2967015Control (Tissue:root)1.246

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.046
SRR9715740Leave25.690
SRR9715741Leave28.568
SRR9715739Root0.000
SRR9715742Root0.000
SRR9715743Root0.180

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.171
SRR8749028MeJA induced 9h0.233
SRR8749029MeJA induced 9h0.063
SRR8749030Uninduced0.153
SRR8749031Uninduced0.000
SRR8749032Uninduced0.289

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.363
SRR8400027Control-Root0.576

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved