Gene detail information of Glyur000645s00028160.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51490.1 | 6.00E-167 | Plant invertase/pectin methylesterase inhibitor superfamily |
| NR | XP_004516727.1 | 0 | PREDICTED: probable pectinesterase/pectinesterase inhibitor 33-like [Cicer arietinum] |
| COG | YP_003404589.1 | 6.00E-48 | pectinesterase [Haloterrigena turkmenica DSM 5511] |
| Swissprot | tr|Q9FHN5|PME59_ARATH | 0 | Pectinesterase 59 (Precursor) |
| trEMBL | tr|A0A072UU49|A0A072UU49_MEDTR | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00645 | 34076 | 36636 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000645s00028160.1 | PF04043.10 | PMEI | 29 | 194 | 1.30E-18 |
| Glyur000645s00028160.1 | PF01095.14 | Pectinesterase | 241 | 538 | 4.70E-132 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.041 |
| SRR1811619 | moderate drought stress | 0.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.015 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.064 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.066 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.065 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.885 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.747 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.244 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.269 |
| SRR2967015 | Control (Tissue:root) | 3.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.199 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.039 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.149 |
| SRR9715743 | Root | 0.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.134 |
| SRR8749028 | MeJA induced 9h | 1.689 |
| SRR8749029 | MeJA induced 9h | 7.914 |
| SRR8749030 | Uninduced | 5.549 |
| SRR8749031 | Uninduced | 4.311 |
| SRR8749032 | Uninduced | 3.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.183 |
| SRR8400027 | Control-Root | 0.207 |