Gene detail information of Glyur000647s00023057.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G55150.12.00E-91DEA(D/H)-box RNA helicase family protein
NRXP_007146899.10hypothetical protein PHAVU_006G079800g [Phaseolus vulgaris]
COGYP_006380502.11.00E-104ATP-dependent RNA helicase [Advenella kashmirensis WT001]
Swissprottr|Q9C718|RH20_ARATH5.00E-108DEAD-box ATP-dependent RNA helicase 20
trEMBLtr|V7BPD2|V7BPD2_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW18893.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006475629763159+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12823DDX5, DBP2 EC:3.6.4.13 Spliceosome map03040
Transcriptional misregulation in cancersmap05202
Proteoglycans in cancermap05205


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000647s00023057.1PF00270.24DEAD1563278.20E-47
Glyur000647s00023057.1PF00271.26Helicase_C4054801.30E-26


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.823
SRR1783600control10.535
SRR1783602moderate drought stress14.924
SRR1811619moderate drought stress14.895

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.370
DRR006520Root Summer glycyrrhizin high producing strain12.252
DRR006521Root Winter glycyrrhizin high producing strain8.158
DRR006522Root Winter glycyrrhizin high producing strain7.769
DRR006523Root Summer glycyrrhizin low producing strain11.547
DRR006524Root Summer glycyrrhizin low producing strain11.487
DRR006525Leaf Summer glycyrrhizin high producing strain20.462
DRR006526Leaf Summer glycyrrhizin high producing strain20.287

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.291
SRR2868004Drought Stress(Tissue:root)18.194
SRR2967015Control (Tissue:root)19.828

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.529
SRR9715740Leave20.708
SRR9715741Leave17.148
SRR9715739Root6.950
SRR9715742Root14.101
SRR9715743Root11.952

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.198
SRR8749028MeJA induced 9h20.096
SRR8749029MeJA induced 9h10.499
SRR8749030Uninduced5.461
SRR8749031Uninduced1.837
SRR8749032Uninduced2.377

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.691
SRR8400027Control-Root16.976

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved