Gene detail information of Glyur000647s00023061.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G27950.16.00E-19cytokinin response factor 4
NRXP_004500382.12.91E-123PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Cicer arietinum]
Swissprottr|O04682|PTI6_SOLLC6.00E-44Pathogenesis-related genes transcriptional activator PTI6
trEMBLtr|K7LR63|K7LR63_SOYBN1.00E-101Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G31401.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006477832579143-


Gene family

Gene familysubfamily
Transcription Factors FamilyERF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000647s00023061.1PF00847.15AP21251751.40E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.708
SRR1783600control15.184
SRR1783602moderate drought stress43.345
SRR1811619moderate drought stress36.815

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.789
DRR006520Root Summer glycyrrhizin high producing strain11.768
DRR006521Root Winter glycyrrhizin high producing strain12.542
DRR006522Root Winter glycyrrhizin high producing strain12.577
DRR006523Root Summer glycyrrhizin low producing strain18.283
DRR006524Root Summer glycyrrhizin low producing strain18.119
DRR006525Leaf Summer glycyrrhizin high producing strain36.204
DRR006526Leaf Summer glycyrrhizin high producing strain35.210

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.531
SRR2868004Drought Stress(Tissue:root)20.769
SRR2967015Control (Tissue:root)28.406

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave34.495
SRR9715740Leave94.105
SRR9715741Leave35.478
SRR9715739Root83.031
SRR9715742Root130.241
SRR9715743Root119.434

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.804
SRR8749028MeJA induced 9h5.740
SRR8749029MeJA induced 9h5.795
SRR8749030Uninduced0.403
SRR8749031Uninduced0.290
SRR8749032Uninduced1.454

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.815
SRR8400027Control-Root7.996

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved