Gene detail information of Glyur000647s00023063.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G41700.52.00E-83ubiquitin conjugating enzyme 8
NRXP_004490726.15.38E-106PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa-like [Cicer arietinum]
COGYP_008797956.14.00E-25ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P35131|UBC8_ARATH2.00E-106Ubiquitin-conjugating enzyme E2 8
trEMBLtr|Q06H23|Q06H23_ARAHY2.00E-106Ubiquitin carrier-like protein {ECO:0000313|EMBL:ABI84263.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006478414687319-


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06689UBE2D, UBC4, UBC5 EC:2.3.2.23 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
MAPK signaling pathway - flymap04013
Toll and Imd signaling pathwaymap04624


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000647s00023063.1PF00179.21UQ_con51415.60E-53


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control104.040
SRR1783600control104.479
SRR1783602moderate drought stress61.465
SRR1811619moderate drought stress61.988

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain105.926
DRR006520Root Summer glycyrrhizin high producing strain103.735
DRR006521Root Winter glycyrrhizin high producing strain56.259
DRR006522Root Winter glycyrrhizin high producing strain54.181
DRR006523Root Summer glycyrrhizin low producing strain116.296
DRR006524Root Summer glycyrrhizin low producing strain116.292
DRR006525Leaf Summer glycyrrhizin high producing strain131.703
DRR006526Leaf Summer glycyrrhizin high producing strain132.973

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)157.006
SRR2868004Drought Stress(Tissue:root)153.113
SRR2967015Control (Tissue:root)140.442

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave143.019
SRR9715740Leave166.763
SRR9715741Leave162.705
SRR9715739Root51.975
SRR9715742Root66.473
SRR9715743Root64.277

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h60.316
SRR8749028MeJA induced 9h82.250
SRR8749029MeJA induced 9h88.338
SRR8749030Uninduced94.171
SRR8749031Uninduced79.427
SRR8749032Uninduced131.726

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root144.725
SRR8400027Control-Root153.178

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved