Gene detail

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Gene detail information of Glyur000649s00025276.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G46220.1	3.00E-148	Protein of unknown function (DUF616)
NR	XP_003593929.1	0	hypothetical protein MTR_2g019450 [Medicago truncatula]
trEMBL	tr\|G7IPW2\|G7IPW2_MEDTR	0	Transmembrane protein {ECO:0000313\|EMBL:AES64180.1}

Sequence

Transcript Sequence

>Glyur000649s00025276.1
ATGGGGAAGCTAATAACAACTTCCAAACCTCTCATCCTCCAATCAAAGCTCCTCTGTTTTTCTCTGCTTTACCTCTTCACCACTCTTTTCCTTGCTCTTTACACCACTCTCTCTCAATCCAAATGCCTCCTCAGATCATCCCCTTCCGATCCCATCCTCAATTCTCTCTTCAACTACCCTTCTTCCTACGGAGAACACAAGTACGCTGTCTCAACCACCCGTTCTACCTGCTCTTCCCCTGTTTTCTTCTCAGATTACTGGGATGTCGTGAAGGAGATCAAGGATTTTCACAAGAACTCTCCAGCACACNCACGGGTTCTGCGGTATTTGCAGGGGAATGCTGATACTTTTGGTGGGAATCTCAGCACCCTTACGAGGTTTTCTTATTTTGATCATCGAAATGATAGCACACAAGTTCCATGTGGATTTCTGAAGAAGTTTCCAATCAGTGATTCTGACCGAATTGCCATGGAAAAGTGTGACAATGTAGTGGTAGTTTCAGCAATCTTCAATGACCATGACAAAATCCGACAACCGAAGGGCCTTGGTTCCAAAACACTGCAAGACGTGTGTTTCTACATGTTCGTGGACGATGTTACCCTCAAGGGTCTTGAACATCATGGATTGGTTTCAACAAAATCAAGAGACTACAAGATAGGTGTATGGAGGGTTGTAAAAGTTGCAAAAGAGGGTTTGTATCAGAACCCTGCAATGAATGGGGTGATACCAAAATATTTGGTCCATAGGCTATTTTCAAATTCACAATTCAGTATTTGGATTGATGCCAAGTTGCAACTCATGGTGGATCCGTTGTTGTTGATTCATTCACTTGTTATATCTGAGAAGGTGGACATGGCTATATCGAAACACCCTTATTATGTTCACACCATGGAGGAAGCAATGGCAACTGCAAGGTGGAAGAAATGGTGGGATGTCAATGCCTTGAAGGAGCAAATGGAGACTTACTGTGAAAATGGATTGCAACCTTGGAGTCCCAGCAAGCAGCCCTATGCATCAGATGTGCCAGATAGTGCTTTGATCTTGAGGAGGCATGGATTGGGCAGTAACCTCTTCTCATGTCTCATGTTCAATGAATTGGAGGCATTTAACCCCAGAGATCAGTTGCCCTTTGCATTTGTTAGAGATCACATGAAGCCCAAACTGAAGCTGAACATGTTTGAGGTGGAGGTTTTTGAACAGGTGGCAGTGGAATACAGGCACAATCTCAAGAGCAGTGTTGGGACCACTTTCAAGAAAAGTACTTCCAGTTCAGGATCAAGGACCAAAAGGGCAGACCCAGATTTGTTGTCTGTGAATGGCAGTTGCTGTGGCAGGTGTCAGAAGTATCTTTCCACAATGTGGGGTACTGAAGAATCCAATGATTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00649	28660	31669	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000649s00025276.1	PF04765.8	DUF616	113	407	3.50E-130

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.849
SRR1783600	control	1.812
SRR1783602	moderate drought stress	0.567
SRR1811619	moderate drought stress	0.587

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.408
DRR006520	Root Summer glycyrrhizin high producing strain	1.377
DRR006521	Root Winter glycyrrhizin high producing strain	0.160
DRR006522	Root Winter glycyrrhizin high producing strain	0.106
DRR006523	Root Summer glycyrrhizin low producing strain	0.397
DRR006524	Root Summer glycyrrhizin low producing strain	0.358
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.887
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.993

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.615
SRR2868004	Drought Stress(Tissue:root)	1.663
SRR2967015	Control (Tissue:root)	1.668

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.930
SRR9715740	Leave	0.274
SRR9715741	Leave	0.346
SRR9715739	Root	0.121
SRR9715742	Root	0.342
SRR9715743	Root	0.386

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.114
SRR8749029	MeJA induced 9h	0.132
SRR8749030	Uninduced	0.125
SRR8749031	Uninduced	0.077
SRR8749032	Uninduced	0.205

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.245
SRR8400027	Control-Root	2.226