Gene detail information of Glyur000650s00035856.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65670.2 | 6.00E-91 | indole-3-acetic acid inducible 9 |
| NR | XP_004490496.1 | 2.60E-164 | PREDICTED: auxin-responsive protein IAA9-like [Cicer arietinum] |
| Swissprot | tr|Q38827|IAA9_ARATH | 3.00E-113 | Auxin-responsive protein IAA9 |
| trEMBL | tr|G7K618|G7K618_MEDTR | 5.00E-162 | Auxin-induced protein {ECO:0000256|RuleBase:RU004549} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00650 | 58415 | 62819 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AUX/IAA |
| EAR motif-containing Proteins | AUX/IAA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000650s00035856.1 | PF02309.11 | AUX_IAA | 110 | 366 | 4.20E-87 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 107.016 |
| SRR1783600 | control | 106.847 |
| SRR1783602 | moderate drought stress | 90.294 |
| SRR1811619 | moderate drought stress | 88.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 145.880 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 145.662 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.164 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 36.695 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 110.520 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 110.441 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.446 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 217.935 |
| SRR2868004 | Drought Stress(Tissue:root) | 255.841 |
| SRR2967015 | Control (Tissue:root) | 174.382 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 56.713 |
| SRR9715740 | Leave | 55.676 |
| SRR9715741 | Leave | 81.674 |
| SRR9715739 | Root | 80.874 |
| SRR9715742 | Root | 138.057 |
| SRR9715743 | Root | 122.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 103.680 |
| SRR8749028 | MeJA induced 9h | 93.969 |
| SRR8749029 | MeJA induced 9h | 60.141 |
| SRR8749030 | Uninduced | 48.584 |
| SRR8749031 | Uninduced | 32.562 |
| SRR8749032 | Uninduced | 41.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 256.198 |
| SRR8400027 | Control-Root | 253.458 |