Gene detail information of Glyur000650s00035857.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G58290.1 | 0 | Glutamyl-tRNA reductase family protein |
| NR | XP_007141311.1 | 0 | hypothetical protein PHAVU_008G185100g [Phaseolus vulgaris] |
| COG | YP_007108864.1 | 5.00E-134 | glutamyl-tRNA reductase [Geitlerinema sp. PCC 7407] |
| Swissprot | tr|P93111|HEM11_CUCSA | 0 | Glutamyl-tRNA reductase 1, chloroplastic (Precursor) |
| trEMBL | tr|V7B6V5|V7B6V5_PHAVU | 0 | Glutamyl-tRNA reductase {ECO:0000256|RuleBase:RU000584} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00650 | 66400 | 70078 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K02492 | hemA | EC:1.2.1.70 | Porphyrin and chlorophyll metabolism | map00860 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000650s00035857.1 | PF05201.10 | GlutR_N | 101 | 252 | 5.50E-44 |
| Glyur000650s00035857.1 | PF01488.15 | Shikimate_DH | 277 | 409 | 5.50E-41 |
| Glyur000650s00035857.1 | PF00745.15 | GlutR_dimer | 423 | 528 | 9.30E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.160 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.152 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 51.220 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 51.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.073 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.291 |
| SRR2967015 | Control (Tissue:root) | 0.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 54.678 |
| SRR9715740 | Leave | 39.739 |
| SRR9715741 | Leave | 31.631 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.359 |
| SRR8749028 | MeJA induced 9h | 0.929 |
| SRR8749029 | MeJA induced 9h | 0.671 |
| SRR8749030 | Uninduced | 0.649 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.801 |
| SRR8400027 | Control-Root | 0.583 |