Gene detail information of Glyur000651s00026834.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02310.1 | 0 | proteolysis 6 |
| NR | XP_004492351.1 | 0 | PREDICTED: uncharacterized protein LOC101506928 isoform X1 [Cicer arietinum] |
| trEMBL | tr|G7L5H7|G7L5H7_MEDTR | 0 | E3 ubiquitin-protein ligase {ECO:0000313|EMBL:AES79344.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00651 | 40563 | 59191 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
| Ubiquitin Family | UBR_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000651s00026834.1 | PF02207.15 | zf-UBR | 114 | 182 | 2.10E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.377 |
| SRR1783600 | control | 13.457 |
| SRR1783602 | moderate drought stress | 15.202 |
| SRR1811619 | moderate drought stress | 15.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.074 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.811 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.003 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.663 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.222 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.365 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.310 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 35.219 |
| SRR2868004 | Drought Stress(Tissue:root) | 42.380 |
| SRR2967015 | Control (Tissue:root) | 43.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.876 |
| SRR9715740 | Leave | 17.976 |
| SRR9715741 | Leave | 21.242 |
| SRR9715739 | Root | 4.657 |
| SRR9715742 | Root | 30.402 |
| SRR9715743 | Root | 26.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.511 |
| SRR8749028 | MeJA induced 9h | 14.436 |
| SRR8749029 | MeJA induced 9h | 6.890 |
| SRR8749030 | Uninduced | 7.842 |
| SRR8749031 | Uninduced | 9.386 |
| SRR8749032 | Uninduced | 5.886 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 33.008 |
| SRR8400027 | Control-Root | 32.248 |