Gene detail information of Glyur000652s00019420.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05260.1 | 2.00E-132 | Peroxidase superfamily protein |
| NR | XP_003597023.1 | 0 | Peroxidase [Medicago truncatula] |
| Swissprot | tr|O23044|PER3_ARATH | 1.00E-166 | Peroxidase 3 (Precursor) |
| trEMBL | tr|G7IKK4|G7IKK4_MEDTR | 0 | Peroxidase family protein {ECO:0000313|EMBL:AES67274.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00652 | 15743 | 17952 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00430 | E1.11.1.7 | EC:1.11.1.7 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000652s00019420.1 | PF00141.18 | peroxidase | 45 | 287 | 8.90E-77 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 316.460 |
| SRR1783600 | control | 317.853 |
| SRR1783602 | moderate drought stress | 118.757 |
| SRR1811619 | moderate drought stress | 117.888 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 132.985 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 131.738 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.133 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.742 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.944 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 322.762 |
| SRR2868004 | Drought Stress(Tissue:root) | 281.941 |
| SRR2967015 | Control (Tissue:root) | 305.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.567 |
| SRR9715740 | Leave | 0.294 |
| SRR9715741 | Leave | 2.328 |
| SRR9715739 | Root | 97.921 |
| SRR9715742 | Root | 50.651 |
| SRR9715743 | Root | 57.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.908 |
| SRR8749028 | MeJA induced 9h | 0.723 |
| SRR8749029 | MeJA induced 9h | 1.021 |
| SRR8749030 | Uninduced | 0.478 |
| SRR8749031 | Uninduced | 1.753 |
| SRR8749032 | Uninduced | 2.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 249.705 |
| SRR8400027 | Control-Root | 230.481 |