Gene detail information of Glyur000652s00019434.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32290.1 | 0 | beta-amylase 6 |
| NR | XP_004487367.1 | 0 | PREDICTED: beta-amylase-like [Cicer arietinum] |
| COG | YP_004639880.1 | 4.00E-50 | beta/alpha-amylase [Paenibacillus mucilaginosus KNP414] |
| Swissprot | tr|P10538|AMYB_SOYBN | 0 | Beta-amylase |
| trEMBL | tr|G7IKM6|G7IKM6_MEDTR | 0 | Beta-amylase {ECO:0000256|RuleBase:RU000509} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00652 | 76215 | 80737 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH14 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000652s00019434.1 | PF01373.12 | Glyco_hydro_14 | 87 | 499 | 1.50E-111 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.109 |
| SRR1783600 | control | 0.110 |
| SRR1783602 | moderate drought stress | 0.102 |
| SRR1811619 | moderate drought stress | 0.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.944 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.935 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.055 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.054 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.807 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.908 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.061 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.208 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.151 |
| SRR2967015 | Control (Tissue:root) | 0.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.745 |
| SRR9715740 | Leave | 14.222 |
| SRR9715741 | Leave | 4.668 |
| SRR9715739 | Root | 0.067 |
| SRR9715742 | Root | 0.589 |
| SRR9715743 | Root | 0.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.035 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.032 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.331 |
| SRR8400027 | Control-Root | 0.370 |