Gene detail information of Glyur000654s00029188.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G19540.14.00E-158Transducin family protein / WD-40 repeat family protein
NRKEH20606.10glutamate-rich WD repeat protein [Medicago truncatula]
COGYP_007065160.13.00E-08WD40 repeat-containing protein [Calothrix sp. PCC 7507]
Swissprottr|O22467|MSI1_ARATH1.00E-25Histone-binding protein MSI1
trEMBLtr|A0A072TTT6|A0A072TTT6_MEDTR0Glutamate-rich WD repeat protein {ECO:0000313|EMBL:KEH20606.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006542833332450+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000654s00029188.3PF12265.3CAF1C_H4-bd461161.30E-18
Glyur000654s00029188.3PF00400.27WD402783112.90E-09
Glyur000654s00029188.3PF00400.27WD403183531.00E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control29.398
SRR1783600control29.642
SRR1783602moderate drought stress41.742
SRR1811619moderate drought stress41.010

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.252
DRR006520Root Summer glycyrrhizin high producing strain36.365
DRR006521Root Winter glycyrrhizin high producing strain44.805
DRR006522Root Winter glycyrrhizin high producing strain43.958
DRR006523Root Summer glycyrrhizin low producing strain33.488
DRR006524Root Summer glycyrrhizin low producing strain33.279
DRR006525Leaf Summer glycyrrhizin high producing strain14.029
DRR006526Leaf Summer glycyrrhizin high producing strain14.184

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)35.910
SRR2868004Drought Stress(Tissue:root)29.759
SRR2967015Control (Tissue:root)26.989

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.041
SRR9715740Leave23.387
SRR9715741Leave17.414
SRR9715739Root30.678
SRR9715742Root39.961
SRR9715743Root38.868

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h79.277
SRR8749028MeJA induced 9h39.105
SRR8749029MeJA induced 9h51.675
SRR8749030Uninduced4.285
SRR8749031Uninduced2.839
SRR8749032Uninduced5.565

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root42.234
SRR8400027Control-Root36.130

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved