Gene detail information of Glyur000654s00029189.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43270.3 | 2.00E-53 | squamosa promoter binding protein-like 2 |
| NR | XP_004504410.1 | 0 | PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 2-like [Cicer arietinum] |
| Swissprot | tr|A2YGR5|SPL12_ORYSI | 7.00E-71 | Squamosa promoter-binding-like protein 12 |
| trEMBL | tr|K7MP80|K7MP80_SOYBN | 1.00E-175 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G00903.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00654 | 35870 | 39339 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SBP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000654s00029189.2 | PF03110.9 | SBP | 175 | 251 | 2.10E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.888 |
| SRR1783600 | control | 8.909 |
| SRR1783602 | moderate drought stress | 18.374 |
| SRR1811619 | moderate drought stress | 18.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.783 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.811 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.650 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.031 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.410 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.196 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.851 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.568 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.973 |
| SRR2967015 | Control (Tissue:root) | 6.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.358 |
| SRR9715740 | Leave | 8.750 |
| SRR9715741 | Leave | 7.973 |
| SRR9715739 | Root | 0.725 |
| SRR9715742 | Root | 2.000 |
| SRR9715743 | Root | 1.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.609 |
| SRR8749028 | MeJA induced 9h | 7.558 |
| SRR8749029 | MeJA induced 9h | 7.564 |
| SRR8749030 | Uninduced | 6.586 |
| SRR8749031 | Uninduced | 6.663 |
| SRR8749032 | Uninduced | 4.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.138 |
| SRR8400027 | Control-Root | 13.095 |