Gene detail information of Glyur000654s00029194.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67340.1 | 2.00E-135 | HCP-like superfamily protein with MYND-type zinc finger |
| NR | XP_003531195.1 | 0 | PREDICTED: F-box protein At1g67340-like [Glycine max] |
| Swissprot | tr|Q9FYF9|FB76_ARATH | 9.00E-171 | F-box protein At1g67340 |
| trEMBL | tr|I1KS21|I1KS21_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G10980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00654 | 76273 | 77763 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000654s00029194.1 | PF08238.7 | Sel1 | 174 | 212 | 0.75 |
| Glyur000654s00029194.1 | PF08238.7 | Sel1 | 214 | 243 | 0.39 |
| Glyur000654s00029194.1 | PF01753.13 | zf-MYND | 321 | 362 | 1.90E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.674 |
| SRR1783600 | control | 8.802 |
| SRR1783602 | moderate drought stress | 13.738 |
| SRR1811619 | moderate drought stress | 13.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.803 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.258 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.947 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.331 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.001 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.767 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.530 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.748 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.488 |
| SRR2967015 | Control (Tissue:root) | 16.546 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 24.667 |
| SRR9715740 | Leave | 29.413 |
| SRR9715741 | Leave | 25.020 |
| SRR9715739 | Root | 23.974 |
| SRR9715742 | Root | 18.443 |
| SRR9715743 | Root | 19.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.107 |
| SRR8749028 | MeJA induced 9h | 2.706 |
| SRR8749029 | MeJA induced 9h | 4.475 |
| SRR8749030 | Uninduced | 7.306 |
| SRR8749031 | Uninduced | 7.929 |
| SRR8749032 | Uninduced | 17.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.520 |
| SRR8400027 | Control-Root | 15.785 |