Gene detail information of Glyur000656s00026160.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G10480.12.00E-85Protein-tyrosine phosphatase-like, PTPLA
NRXP_004509687.11.33E-131PREDICTED: very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase PASTICCINO 2A-like isoform X1 [Cicer arietinum]
Swissprottr|Q7XSZ4|PAS2A_ORYSJ4.00E-115Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A
trEMBLtr|V7CHT6|V7CHT6_PHAVU5.00E-123Uncharacterized protein {ECO:0000313|EMBL:ESW28471.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006567545084681+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10703PHS1, PAS2 EC:4.2.1.134 Fatty acid metabolism map01212
Fatty acid elongationmap00062
Biosynthesis of unsaturated fatty acidsmap01040


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000656s00026160.1PF04387.9PTPLA552012.10E-53


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.363
SRR1783600control18.029
SRR1783602moderate drought stress14.210
SRR1811619moderate drought stress13.367

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.733
DRR006520Root Summer glycyrrhizin high producing strain12.738
DRR006521Root Winter glycyrrhizin high producing strain2.395
DRR006522Root Winter glycyrrhizin high producing strain2.305
DRR006523Root Summer glycyrrhizin low producing strain11.087
DRR006524Root Summer glycyrrhizin low producing strain11.454
DRR006525Leaf Summer glycyrrhizin high producing strain18.215
DRR006526Leaf Summer glycyrrhizin high producing strain17.740

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)42.433
SRR2868004Drought Stress(Tissue:root)26.259
SRR2967015Control (Tissue:root)28.194

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.067
SRR9715740Leave25.116
SRR9715741Leave17.338
SRR9715739Root10.774
SRR9715742Root10.434
SRR9715743Root8.523

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.968
SRR8749028MeJA induced 9h6.706
SRR8749029MeJA induced 9h4.060
SRR8749030Uninduced3.349
SRR8749031Uninduced1.551
SRR8749032Uninduced1.761

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root43.882
SRR8400027Control-Root46.012

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved