Gene detail information of Glyur000657s00033590.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G68660.14.00E-57Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein
NRAFK40356.11.49E-99unknown [Lotus japonicus]
COGYP_007156835.13.00E-26ATP-dependent Clp protease adapter protein clpS [Anabaena cylindrica PCC 7122]
trEMBLtr|I3SJB4|I3SJB4_LOTJA6.00E-100Uncharacterized protein {ECO:0000313|EMBL:AFK40356.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00657109540115959-


Gene family

Gene familysubfamily
Ubiquitin FamilyN-domain


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0030163  protein catabolic process



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000657s00033590.1PF02617.12ClpS741461.50E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.219
SRR1783600control25.408
SRR1783602moderate drought stress23.890
SRR1811619moderate drought stress23.792

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain37.776
DRR006520Root Summer glycyrrhizin high producing strain37.436
DRR006521Root Winter glycyrrhizin high producing strain23.733
DRR006522Root Winter glycyrrhizin high producing strain22.994
DRR006523Root Summer glycyrrhizin low producing strain54.681
DRR006524Root Summer glycyrrhizin low producing strain54.757
DRR006525Leaf Summer glycyrrhizin high producing strain107.434
DRR006526Leaf Summer glycyrrhizin high producing strain107.354

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.010
SRR2868004Drought Stress(Tissue:root)22.811
SRR2967015Control (Tissue:root)20.274

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave84.870
SRR9715740Leave153.171
SRR9715741Leave100.816
SRR9715739Root1.624
SRR9715742Root8.987
SRR9715743Root8.867

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h34.421
SRR8749028MeJA induced 9h20.515
SRR8749029MeJA induced 9h33.625
SRR8749030Uninduced17.463
SRR8749031Uninduced16.664
SRR8749032Uninduced15.237

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.849
SRR8400027Control-Root25.322

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved