Gene detail information of Glyur000658s00024843.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37000.1 | 2.00E-33 | TCP family transcription factor |
| NR | XP_004497526.1 | 9.02E-95 | PREDICTED: transcription factor TCP11-like [Cicer arietinum] |
| Swissprot | tr|Q9SJK7|TCP11_ARATH | 2.00E-43 | Transcription factor TCP11 |
| trEMBL | tr|D1MJ53|D1MJ53_PEA | 1.00E-89 | Proliferating cell nuclear antigen gene-controlling element binding factor {ECO:0000313|EMBL:ACZ52907.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00658 | 43639 | 44268 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TCP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000658s00024843.1 | PF03634.8 | TCP | 51 | 130 | 1.80E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.220 |
| SRR1783600 | control | 6.402 |
| SRR1783602 | moderate drought stress | 11.070 |
| SRR1811619 | moderate drought stress | 10.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.067 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.227 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.168 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.250 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.050 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.577 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.610 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.934 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.374 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.526 |
| SRR2967015 | Control (Tissue:root) | 8.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.892 |
| SRR9715740 | Leave | 11.701 |
| SRR9715741 | Leave | 7.326 |
| SRR9715739 | Root | 12.359 |
| SRR9715742 | Root | 11.594 |
| SRR9715743 | Root | 9.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.228 |
| SRR8749028 | MeJA induced 9h | 3.916 |
| SRR8749029 | MeJA induced 9h | 2.401 |
| SRR8749030 | Uninduced | 0.987 |
| SRR8749031 | Uninduced | 0.143 |
| SRR8749032 | Uninduced | 0.751 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.707 |
| SRR8400027 | Control-Root | 8.269 |