Gene detail information of Glyur000660s00025394.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G12410.13.00E-103CLP protease proteolytic subunit 2
NRXP_004515759.11.99E-176PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic-like [Cicer arietinum]
COGYP_007124388.16.00E-72protease subunit of ATP-dependent protease [Microcoleus sp. PCC 7113]
Swissprottr|Q9XJ36|CLPR2_ARATH4.00E-137ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic (Precursor)
trEMBLtr|G7JK76|G7JK76_MEDTR5.00E-172ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006603702240107-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01358clpP, CLPP EC:3.4.21.92 Cell cycle - Caulobacter map04112
Longevity regulating pathway - wormmap04212


Gene Ontology

biological_process

GO:0006508  proteolysis


molecular_function

GO:0004252  serine-type endopeptidase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000660s00025394.1PF00574.18CLP_protease902658.90E-59


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control36.336
SRR1783600control36.575
SRR1783602moderate drought stress27.684
SRR1811619moderate drought stress27.542

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain40.514
DRR006520Root Summer glycyrrhizin high producing strain40.066
DRR006521Root Winter glycyrrhizin high producing strain29.360
DRR006522Root Winter glycyrrhizin high producing strain28.000
DRR006523Root Summer glycyrrhizin low producing strain22.713
DRR006524Root Summer glycyrrhizin low producing strain22.480
DRR006525Leaf Summer glycyrrhizin high producing strain71.529
DRR006526Leaf Summer glycyrrhizin high producing strain70.931

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)63.831
SRR2868004Drought Stress(Tissue:root)59.357
SRR2967015Control (Tissue:root)53.107

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave88.701
SRR9715740Leave146.715
SRR9715741Leave80.015
SRR9715739Root48.589
SRR9715742Root37.005
SRR9715743Root40.857

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h37.658
SRR8749028MeJA induced 9h21.514
SRR8749029MeJA induced 9h30.661
SRR8749030Uninduced28.558
SRR8749031Uninduced14.277
SRR8749032Uninduced26.384

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root99.164
SRR8400027Control-Root96.486

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved