Gene detail information of Glyur000661s00022609.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76110.1 | 4.00E-102 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain |
| NR | XP_003523234.1 | 0 | PREDICTED: high mobility group B protein 9-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9SGS2|HMGB9_ARATH | 2.00E-126 | High mobility group B protein 9 |
| trEMBL | tr|I1JSY3|I1JSY3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G02210.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00661 | 16486 | 19384 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ARID |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000661s00022609.1 | PF01388.16 | ARID | 34 | 129 | 1.10E-17 |
| Glyur000661s00022609.1 | PF00505.14 | HMG_box | 265 | 332 | 4.50E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.024 |
| SRR1811619 | moderate drought stress | 0.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.140 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.139 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.358 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.325 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 36.273 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.190 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.390 |
| SRR2967015 | Control (Tissue:root) | 0.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.825 |
| SRR9715740 | Leave | 22.310 |
| SRR9715741 | Leave | 6.998 |
| SRR9715739 | Root | 0.046 |
| SRR9715742 | Root | 0.542 |
| SRR9715743 | Root | 0.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.104 |
| SRR8749028 | MeJA induced 9h | 0.192 |
| SRR8749029 | MeJA induced 9h | 0.219 |
| SRR8749030 | Uninduced | 0.700 |
| SRR8749031 | Uninduced | 0.124 |
| SRR8749032 | Uninduced | 0.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.065 |
| SRR8400027 | Control-Root | 0.253 |