Gene detail information of Glyur000661s00022610.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G17030.1 | 4.00E-17 | F-box family protein with a domain of unknown function (DUF295) |
| NR | XP_004500900.1 | 8.41E-161 | PREDICTED: F-box protein At2g26160-like [Cicer arietinum] |
| Swissprot | tr|Q3EBZ2|SKI23_ARATH | 4.00E-22 | F-box protein SKIP23 |
| trEMBL | tr|I1JSY2|I1JSY2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G02200.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00661 | 25375 | 27346 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000661s00022610.1 | PF00646.28 | F-box | 7 | 46 | 0.00014 |
| Glyur000661s00022610.1 | PF03478.13 | DUF295 | 309 | 364 | 1.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.684 |
| SRR1783600 | control | 5.501 |
| SRR1783602 | moderate drought stress | 10.406 |
| SRR1811619 | moderate drought stress | 10.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.798 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.259 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.141 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.166 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.847 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.989 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.645 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.237 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.671 |
| SRR2967015 | Control (Tissue:root) | 10.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.423 |
| SRR9715740 | Leave | 15.374 |
| SRR9715741 | Leave | 15.551 |
| SRR9715739 | Root | 8.720 |
| SRR9715742 | Root | 8.039 |
| SRR9715743 | Root | 8.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.538 |
| SRR8749028 | MeJA induced 9h | 9.810 |
| SRR8749029 | MeJA induced 9h | 10.464 |
| SRR8749030 | Uninduced | 7.903 |
| SRR8749031 | Uninduced | 11.995 |
| SRR8749032 | Uninduced | 24.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.741 |
| SRR8400027 | Control-Root | 7.707 |