Gene detail information of Glyur000662s00023477.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32770.1 | 4.00E-07 | tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) |
| NR | XP_003522704.1 | 4.50E-10 | PREDICTED: tocopherol cyclase, chloroplastic-like isoform X1 [Glycine max] |
| Swissprot | tr|Q94FY8|TOCC_MAIZE | 7.00E-09 | Probable tocopherol cyclase, chloroplastic (Precursor) |
| trEMBL | tr|I1JUU2|I1JUU2_SOYBN | 2.00E-10 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G08750.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00662 | 336 | 2037 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09834 | VTE1, SXD1 | EC:5.5.1.24 | Ubiquinone and other terpenoid-quinone biosynthesis | map00130 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.645 |
| SRR1783600 | control | 8.625 |
| SRR1783602 | moderate drought stress | 13.377 |
| SRR1811619 | moderate drought stress | 13.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.500 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.637 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.008 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.933 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.662 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.169 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.176 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.862 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.380 |
| SRR2967015 | Control (Tissue:root) | 11.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.797 |
| SRR9715740 | Leave | 2.033 |
| SRR9715741 | Leave | 2.927 |
| SRR9715739 | Root | 0.514 |
| SRR9715742 | Root | 2.962 |
| SRR9715743 | Root | 2.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.186 |
| SRR8749028 | MeJA induced 9h | 6.131 |
| SRR8749029 | MeJA induced 9h | 0.619 |
| SRR8749030 | Uninduced | 1.094 |
| SRR8749031 | Uninduced | 1.330 |
| SRR8749032 | Uninduced | 0.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 16.889 |
| SRR8400027 | Control-Root | 16.364 |