Gene detail information of Glyur000662s00023483.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19860.1 | 2.00E-67 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| NR | XP_007136071.1 | 0 | hypothetical protein PHAVU_009G015300g [Phaseolus vulgaris] |
| Swissprot | tr|Q56XU4|C3H6_ARATH | 4.00E-94 | Zinc finger CCCH domain-containing protein 6 |
| trEMBL | tr|V7ARY1|V7ARY1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW08065.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00662 | 29204 | 34851 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.966 |
| SRR1783600 | control | 36.461 |
| SRR1783602 | moderate drought stress | 43.592 |
| SRR1811619 | moderate drought stress | 42.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 36.730 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.551 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 76.084 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 74.446 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.046 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.567 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.561 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 33.244 |
| SRR2868004 | Drought Stress(Tissue:root) | 40.994 |
| SRR2967015 | Control (Tissue:root) | 37.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.303 |
| SRR9715740 | Leave | 24.041 |
| SRR9715741 | Leave | 29.007 |
| SRR9715739 | Root | 12.226 |
| SRR9715742 | Root | 26.200 |
| SRR9715743 | Root | 22.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 71.143 |
| SRR8749028 | MeJA induced 9h | 82.926 |
| SRR8749029 | MeJA induced 9h | 95.574 |
| SRR8749030 | Uninduced | 54.185 |
| SRR8749031 | Uninduced | 70.458 |
| SRR8749032 | Uninduced | 70.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 30.775 |
| SRR8400027 | Control-Root | 30.978 |