Gene detail information of Glyur000662s00023495.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G19940.10glycosyl hydrolase 9B5
NRAES73992.20glycosyl hydrolase family 9 protein [Medicago truncatula]
COGYP_290232.11.00E-87endoglucanase [Thermobifida fusca YX]
Swissprottr|Q69SG5|GUN24_ORYSJ0Endoglucanase 24 (Precursor)
trEMBLtr|G7J4Q1|G7J4Q1_MEDTR0Endoglucanase {ECO:0000256|RuleBase:RU361166}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00662117799122445-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH9


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000662s00023495.1PF00759.14Glyco_hydro_9575151.80E-141


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.992
SRR1783600control26.113
SRR1783602moderate drought stress14.765
SRR1811619moderate drought stress14.697

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.721
DRR006520Root Summer glycyrrhizin high producing strain12.632
DRR006521Root Winter glycyrrhizin high producing strain4.003
DRR006522Root Winter glycyrrhizin high producing strain3.865
DRR006523Root Summer glycyrrhizin low producing strain4.601
DRR006524Root Summer glycyrrhizin low producing strain4.648
DRR006525Leaf Summer glycyrrhizin high producing strain17.309
DRR006526Leaf Summer glycyrrhizin high producing strain17.270

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)46.797
SRR2868004Drought Stress(Tissue:root)22.860
SRR2967015Control (Tissue:root)23.342

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.785
SRR9715740Leave4.404
SRR9715741Leave5.199
SRR9715739Root22.887
SRR9715742Root20.535
SRR9715743Root22.947

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.665
SRR8749028MeJA induced 9h8.340
SRR8749029MeJA induced 9h11.246
SRR8749030Uninduced4.194
SRR8749031Uninduced2.633
SRR8749032Uninduced3.286

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.090
SRR8400027Control-Root36.397

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved