Gene detail information of Glyur000663s00030873.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G17110.1 | 0 | ubiquitin-specific protease 15 |
| NR | XP_006598161.1 | 0 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9FPS9|UBP15_ARATH | 0 | Ubiquitin carboxyl-terminal hydrolase 15 |
| trEMBL | tr|I1MJ12|I1MJ12_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G39730.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00663 | 44114 | 53250 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000663s00030873.1 | PF01753.13 | zf-MYND | 84 | 121 | 1.30E-08 |
| Glyur000663s00030873.1 | PF00443.24 | UCH | 477 | 780 | 2.90E-46 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.569 |
| SRR1783600 | control | 8.791 |
| SRR1783602 | moderate drought stress | 7.243 |
| SRR1811619 | moderate drought stress | 7.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.110 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.004 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.933 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.960 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.850 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.783 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.710 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 22.823 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.208 |
| SRR2967015 | Control (Tissue:root) | 15.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.739 |
| SRR9715740 | Leave | 4.644 |
| SRR9715741 | Leave | 4.596 |
| SRR9715739 | Root | 1.344 |
| SRR9715742 | Root | 5.725 |
| SRR9715743 | Root | 4.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.272 |
| SRR8749028 | MeJA induced 9h | 21.806 |
| SRR8749029 | MeJA induced 9h | 9.930 |
| SRR8749030 | Uninduced | 10.729 |
| SRR8749031 | Uninduced | 8.653 |
| SRR8749032 | Uninduced | 6.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.861 |
| SRR8400027 | Control-Root | 22.614 |