Gene detail information of Glyur000664s00026046.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G36870.1 | 1.00E-71 | xyloglucan endotransglucosylase/hydrolase 32 |
| NR | XP_003539787.1 | 5.68E-135 | PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32-like isoform X1 [Glycine max] |
| COG | YP_003830841.1 | 7.00E-08 | endo-1,3(4)-beta-glucanase [Butyrivibrio proteoclasticus B316] |
| Swissprot | tr|Q9SJL9|XTH32_ARATH | 4.00E-102 | Probable xyloglucan endotransglucosylase/hydrolase protein 32 (Precursor) |
| trEMBL | tr|I1LR80|I1LR80_SOYBN | 2.00E-135 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00664 | 5757 | 7800 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000664s00026046.1 | PF00722.16 | Glyco_hydro_16 | 72 | 191 | 6.20E-38 |
| Glyur000664s00026046.1 | PF06955.7 | XET_C | 217 | 262 | 4.10E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 49.394 |
| SRR1783600 | control | 48.918 |
| SRR1783602 | moderate drought stress | 19.237 |
| SRR1811619 | moderate drought stress | 19.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.265 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.457 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.318 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.350 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.757 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.062 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.405 |
| SRR2967015 | Control (Tissue:root) | 5.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.799 |
| SRR9715740 | Leave | 1.459 |
| SRR9715741 | Leave | 0.937 |
| SRR9715739 | Root | 39.794 |
| SRR9715742 | Root | 10.056 |
| SRR9715743 | Root | 15.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.062 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 41.750 |
| SRR8400027 | Control-Root | 40.755 |