Gene detail

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Gene detail information of Glyur000664s00026047.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28110.1	5.00E-172	Exostosin family protein
NR	XP_004487567.1	0	PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7-like [Cicer arietinum]
COG	YP_677520.1	3.00E-07	hypothetical protein CHU_0899 [Cytophaga hutchinsonii ATCC 33406]
Swissprot	tr\|Q9ZUV3\|IRX7_ARATH	0	Probable glucuronoxylan glucuronosyltransferase IRX7
trEMBL	tr\|I1M4G9\|I1M4G9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G39700.1}

Sequence

Transcript Sequence

>Glyur000664s00026047.1
TGGTTTTAAATTTCGATGTTGGAGGAGCTAAAGAGACCCCTGAAGAGCAAGGGGTTCTATGTGAGGATGAAGCTCCTGCACAACAAACACAGCACAATAAGGCCTCAACAAGAAAAAACCTTCTGCCTCTACCCATATTACAAATGGGTTCTTTGGCTTTCCCTCTCCCTCTATTTCTTCACCTCTTTTCTCATCAGCAACGACCCCCAAACCCCACCAACCTCACCAACCCATGACTCAAACTCCAATTCCAACGTTGTCTCTCGTGCCCTCTTCGAATCCACCAACAACACCACAGCACAAGCCCATAACACTCTAGGGGTATTGAAAAATTTGAAGGTGTTCATCTATGACCTTCCTTCTAAATACAACATCGATTGGCTCGCGAACGAGAGGTGTAGCAGTCATTTGTTCGCTTCTGAGGTGGCTATTCACAGAGCACTGTTGAAAAGCGACGTGCGCACGTTAGACCCTTACGAAGCAGACTTCTTCTTCGTCCCCGTCTACGTTTCCTGCAACTTCAGCACCGTTAACGGTTTTCCGGCNATTGGCCACGCGCGCGGGCTCATCGCCTCCGCCGTGAAGCTCGTCTCCACGGAACACCCTTTCTGGAACCGAAGCAGAGGATCCGACCACGTCTTCGTCGCTTCCCACGATTTCGGCGCATGCTTCCACACCCTGGAGGACAGGGCAATGGCTGATGGGATACCGGGAATGTTGAAGAACTCGATCGTGTTGCAGACGTTCGGCGTGGTGCACGAGCATCCGTGCCAGGACGTGGAGAATGTGGTGATACCGCCTTACGTTTCGCCGGAAAGTGTACGGAGCACGCTGGAGAAAGCTCCGGTGAACGGACGGCGAGACATTTGGGCGTTCTTCCGTGGCAAAATGGAGGTCCATCCCAAAAACGTCAGCGGACGGTTTTACAGCAAGCGGGTGAGGACGGTTATATGGCGGAAGTTTAATGGTNACCGGAGGTTTTACCTGCAGAGGCATAGGTTTGCCGGTTACCAGTTGGAAATTGCGAGGTCGGTGTTCTGTCTTTGCCCGCTGGGGTGGGCCCCGTGGAGTCCGAGGTTGGTGGAATCGGNTGCACTGGGGTGTGTGCCCGTCGTNATTGCGGATGGAATCCGGTTGCCGTTTCCCTCCGCCGTTAAGTGGCCGGATATATCGTTGACGGTGGCGGAGAAGGACGTGGGGAAGCTGGCNACGATCCTGGAGCGCGTGGCTGCCACCAACCTCAGCGCCATCCAGAGGAACCTGTGGGACCCGAGTACCAGGCGGGCCCTGCTTTTCAACAGTGAAGTCCAAGAAGGTGACGCCACGTGGCAGGTCCTGGTTAGTCTGAGTCAGAGGCTGGGTAGGTCTTACCGTAGGTCCAAGCTTTCTAGCCAATCCAAACGTGGTAAGGCTGCGATCGAGTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00664	12789	14571	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT47

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000664s00026047.1	PF03016.10	Exostosin	105	404	3.50E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.934
SRR1783600	control	0.890
SRR1783602	moderate drought stress	0.453
SRR1811619	moderate drought stress	0.443

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.506
DRR006520	Root Summer glycyrrhizin high producing strain	2.628
DRR006521	Root Winter glycyrrhizin high producing strain	0.007
DRR006522	Root Winter glycyrrhizin high producing strain	0.076
DRR006523	Root Summer glycyrrhizin low producing strain	2.437
DRR006524	Root Summer glycyrrhizin low producing strain	2.763
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.963
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.855

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	18.064
SRR2868004	Drought Stress(Tissue:root)	9.529
SRR2967015	Control (Tissue:root)	11.146

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	11.267
SRR9715740	Leave	2.018
SRR9715741	Leave	2.457
SRR9715739	Root	1.003
SRR9715742	Root	5.210
SRR9715743	Root	4.345

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.100
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.070
SRR8400027	Control-Root	3.811