Gene detail information of Glyur000664s00026061.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G28200.11.00E-37C2H2-type zinc finger family protein
NRKEH38879.11.53E-88C2H2-type zinc finger protein [Medicago truncatula]
Swissprottr|Q681X4|ZAT5_ARATH4.00E-47Zinc finger protein ZAT5
trEMBLtr|A0A072VA47|A0A072VA47_MEDTR6.00E-89C2H2-type zinc finger protein {ECO:0000313|EMBL:KEH38879.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006648825389203+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2
EAR motif-containing ProteinsC2H2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000664s00026061.1PF13912.1zf-C2H2_61361612.60E-10
Glyur000664s00026061.1PF13912.1zf-C2H2_62362617.90E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.406
SRR1783600control4.678
SRR1783602moderate drought stress4.721
SRR1811619moderate drought stress4.575

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.029
DRR006520Root Summer glycyrrhizin high producing strain10.486
DRR006521Root Winter glycyrrhizin high producing strain0.352
DRR006522Root Winter glycyrrhizin high producing strain0.344
DRR006523Root Summer glycyrrhizin low producing strain10.556
DRR006524Root Summer glycyrrhizin low producing strain10.473
DRR006525Leaf Summer glycyrrhizin high producing strain2.566
DRR006526Leaf Summer glycyrrhizin high producing strain2.562

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)62.223
SRR2868004Drought Stress(Tissue:root)62.450
SRR2967015Control (Tissue:root)78.021

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.964
SRR9715740Leave18.463
SRR9715741Leave19.177
SRR9715739Root17.273
SRR9715742Root23.606
SRR9715743Root18.622

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.358
SRR8749028MeJA induced 9h15.302
SRR8749029MeJA induced 9h2.890
SRR8749030Uninduced6.476
SRR8749031Uninduced0.081
SRR8749032Uninduced0.090

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.221
SRR8400027Control-Root27.293

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved