Gene detail information of Glyur000664s00026063.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22890.1 | 3.00E-66 | C2H2 and C2HC zinc fingers superfamily protein |
| NR | XP_007150139.1 | 5.12E-176 | hypothetical protein PHAVU_005G130100g [Phaseolus vulgaris] |
| Swissprot | tr|Q9C8N5|STOP1_ARATH | 4.00E-77 | Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 |
| trEMBL | tr|V7BYJ4|V7BYJ4_PHAVU | 2.00E-176 | Uncharacterized protein {ECO:0000313|EMBL:ESW22133.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00664 | 105883 | 107091 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000664s00026063.1 | PF00096.21 | zf-C2H2 | 247 | 269 | 0.00011 |
| Glyur000664s00026063.1 | PF13894.1 | zf-C2H2_4 | 343 | 364 | 1.8 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.091 |
| SRR1783600 | control | 0.088 |
| SRR1783602 | moderate drought stress | 0.093 |
| SRR1811619 | moderate drought stress | 0.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.090 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.294 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.505 |
| SRR2967015 | Control (Tissue:root) | 2.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.059 |
| SRR8749028 | MeJA induced 9h | 0.055 |
| SRR8749029 | MeJA induced 9h | 0.151 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.408 |
| SRR8400027 | Control-Root | 0.477 |