Gene detail information of Glyur000664s00026066.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G27980.10Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain
NRXP_004487555.10PREDICTED: uncharacterized protein LOC101496252 [Cicer arietinum]
Swissprottr|F4KBP5|CHR4_ARATH7.00E-10Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115}
trEMBLtr|K7LVM3|K7LVM3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G30320.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00664112362119924-


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008080  N-acetyltransferase activity

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000664s00026066.1PF00628.24PHD5786192.70E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.162
SRR1783600control10.325
SRR1783602moderate drought stress12.541
SRR1811619moderate drought stress12.495

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.975
DRR006520Root Summer glycyrrhizin high producing strain15.773
DRR006521Root Winter glycyrrhizin high producing strain16.224
DRR006522Root Winter glycyrrhizin high producing strain15.837
DRR006523Root Summer glycyrrhizin low producing strain16.394
DRR006524Root Summer glycyrrhizin low producing strain16.527
DRR006525Leaf Summer glycyrrhizin high producing strain8.627
DRR006526Leaf Summer glycyrrhizin high producing strain8.717

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)34.955
SRR2868004Drought Stress(Tissue:root)40.261
SRR2967015Control (Tissue:root)42.294

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.461
SRR9715740Leave24.988
SRR9715741Leave26.978
SRR9715739Root6.856
SRR9715742Root28.025
SRR9715743Root22.945

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.470
SRR8749028MeJA induced 9h36.657
SRR8749029MeJA induced 9h16.095
SRR8749030Uninduced19.498
SRR8749031Uninduced19.749
SRR8749032Uninduced17.548

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root35.686
SRR8400027Control-Root35.011

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved