Gene detail information of Glyur000665s00020416.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G10740.10alpha-L-arabinofuranosidase 1
NRKHN34572.10Alpha-L-arabinofuranosidase 1 [Glycine soja]
COGYP_003573897.13.00E-107alpha-N-arabinofuranosidase [Prevotella ruminicola 23]
Swissprottr|Q9SG80|ASD1_ARATH0Alpha-L-arabinofuranosidase 1 (Precursor)
trEMBLtr|I1N8L6|I1N8L6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G30450.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006653889454888-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH51


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01209abfA EC:3.2.1.55 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0046373  L-arabinose metabolic process


molecular_function

GO:0046556  alpha-L-arabinofuranosidase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000665s00020416.1PF06964.7Alpha-L-AF_C4646511.20E-46
Glyur000665s00020416.1PF06964.7Alpha-L-AF_C103811993.50E-29


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.332
SRR1783600control9.353
SRR1783602moderate drought stress11.622
SRR1811619moderate drought stress11.471

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.658
DRR006520Root Summer glycyrrhizin high producing strain6.744
DRR006521Root Winter glycyrrhizin high producing strain4.638
DRR006522Root Winter glycyrrhizin high producing strain4.629
DRR006523Root Summer glycyrrhizin low producing strain17.323
DRR006524Root Summer glycyrrhizin low producing strain17.680
DRR006525Leaf Summer glycyrrhizin high producing strain15.214
DRR006526Leaf Summer glycyrrhizin high producing strain15.253

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)28.920
SRR2868004Drought Stress(Tissue:root)48.688
SRR2967015Control (Tissue:root)73.298

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.595
SRR9715740Leave22.068
SRR9715741Leave27.352
SRR9715739Root2.030
SRR9715742Root17.008
SRR9715743Root14.764

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.468
SRR8749028MeJA induced 9h44.200
SRR8749029MeJA induced 9h17.763
SRR8749030Uninduced37.144
SRR8749031Uninduced45.546
SRR8749032Uninduced26.935

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.130
SRR8400027Control-Root30.664

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved