Gene detail information of Glyur000665s00020422.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G56940.10dicarboxylate diiron protein, putative (Crd1)
NRAFK38079.10unknown [Lotus japonicus]
COGYP_007146237.12.00E-168Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase [Cylindrospermum stagnale PCC 7417]
Swissprottr|Q6SJV8|CRD1_GOSHI0Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic (Precursor)
trEMBLtr|I3SCT7|I3SCT7_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK38079.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006658561488481+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04035E1.14.13.81, acsF, chlE EC:1.14.13.81 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0015979  photosynthesis

GO:0015995  chlorophyll biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0046872  metal ion binding

GO:0048529  magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000665s00020422.1PF02915.12Rubrerythrin1322656.60E-40


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.375
SRR1783600control6.500
SRR1783602moderate drought stress10.087
SRR1811619moderate drought stress9.957

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.538
DRR006520Root Summer glycyrrhizin high producing strain6.588
DRR006521Root Winter glycyrrhizin high producing strain1.077
DRR006522Root Winter glycyrrhizin high producing strain1.154
DRR006523Root Summer glycyrrhizin low producing strain2.941
DRR006524Root Summer glycyrrhizin low producing strain3.002
DRR006525Leaf Summer glycyrrhizin high producing strain647.531
DRR006526Leaf Summer glycyrrhizin high producing strain645.000

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.710
SRR2868004Drought Stress(Tissue:root)44.280
SRR2967015Control (Tissue:root)13.832

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave542.055
SRR9715740Leave589.956
SRR9715741Leave441.762
SRR9715739Root8.978
SRR9715742Root15.790
SRR9715743Root14.807

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.753
SRR8749028MeJA induced 9h13.875
SRR8749029MeJA induced 9h7.217
SRR8749030Uninduced7.009
SRR8749031Uninduced0.546
SRR8749032Uninduced3.677

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root39.595
SRR8400027Control-Root33.092

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved