Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000667s00025230.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33580.1	3.00E-107	Protein kinase superfamily protein
NR	XP_003601388.1	0	Receptor-like protein kinase [Medicago truncatula]
COG	YP_003372407.1	1.00E-12	serine/threonine protein kinase [Pirellula staleyi DSM 6068]
Swissprot	tr\|O22808\|LYK5_ARATH	1.00E-128	Protein LYK5 (Precursor)
trEMBL	tr\|G7J6Q7\|G7J6Q7_MEDTR	0	LysM type receptor kinase {ECO:0000313\|EMBL:AES71639.2}

Sequence

Transcript Sequence

>Glyur000667s00025230.1
ATGGGCACATTCTTATGTGCTACCACCACCATCACTCTTCTTTTGTTGCTGCTCAATTTCCACATCCCAGAAACAAATTCCCAACAAGACTATCTAGATAACAAGCAGCTAGATTGTGATGACCCCTCAAACTCTACCTATGGCAATATCTGCAATAGCATCAATTCTTGCCAATCCTACCTCNCCTTCAAATCAAGCCCTCCTTACTACAACACCCCTTCCTCCATAACCTACCTCTTGGACTCCACAGCCCCTCTCATAGCCAAATCCAACAACATCTCAGATGTGGAGCCCATCCCAACAGACACCATGATGACTATCCCTGTAAAATGCTCATGTTCTGGCCTCTACTACCAGTACAATGCTTCATACACATTGAAGACTGAGGATGAGAACTACTTCACCCTTGCCAACAACACCTATGAGTCCCTCACAACGTGTCAGGCGCTTGCGGCTCAGAACATCTATGGACTCACAAATCTCACTGCAGGGCTCAACCTTCATGTTCCATTAAGTTGTGCTTGTCCAACCTCAAAGCAAATGGAAAATGGGTTCAAGTATCTTCTTACATACTTGGTCTCTGAAGGAGAATATCCTGAACTGATTGCTGAGCTTTTTGGGGTTGATACTCAGAGCATTTTGGATGCAAATAAGCTTCCTTCTGCAGAAACAGTTATCTACTACTTCACTCCTTTGATGGTGCCTCTAAGACACGAGCCACCTACCAGGATACAAAGGACACTAACGTCATCGCCACCATCGCCGTCACCTCTGCCNTCACCTCCCATATTGGAAAATCCAGCTGGGGATGGAGATTCAAACTCTTCTAAGAAATGGGTGATTGTTGGAATTACTGTTGGAGCTGCATTGACCAAACTTTTCTTAGCTTCTTCTGCAGCCACTAAAATCACCAACACAAGTACAACCAAACCCTCCTTCTCCCTGTCTTCTGAAGGGCTTCGCTATGCCGTTGAGTCTTTGACAGTGTACAACTTTGAGGAGCTTCATGAGGCGACAGGCTTTTACAGTGCAGCTAACAGAATCAGGGGTTCTGTTTACCGAGCATCCCTGAAGGGTGACGATGCCGCAGTTAAGGTTCTTAAAGGTGATGTATCTGGGGAGATCATCATTCTGAGGAGAATCAACCATGCCAACATAACACGCCTCTCTGGGTTTTGTGTACACAAAGGGAGCACCTATCTTGTGTACGAGTTCGCTGAAAATGGTTCTCTTGATGAATGGATTCATTTTAACAAGAGTCTAAATTCTGTGGCTCTGACTTGGAGGCAGAGAGTTCAGATTGCACAGGATGTAGCTGATGCTTTGAATTACCTTCACAACTATACCAACCCCCCACATATCCACAAGAATTTGAAGAGTGGCAATGTGCTCTTGGATGGAGGTTTTAGAGGTGAAGTTTCCAACTTTGGGTTAGCAAGAGTGGTGGGTGATGACAAGTGGGGTTCCAATTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00667	5508	7021	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.1.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0004713 protein tyrosine kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000667s00025230.1	PF07714.12	Pkinase_Tyr	360	484	7.60E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.665
SRR1783600	control	0.739
SRR1783602	moderate drought stress	3.759
SRR1811619	moderate drought stress	3.777

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.332
DRR006520	Root Summer glycyrrhizin high producing strain	0.291
DRR006521	Root Winter glycyrrhizin high producing strain	0.037
DRR006522	Root Winter glycyrrhizin high producing strain	0.026
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.166
SRR2868004	Drought Stress(Tissue:root)	0.029
SRR2967015	Control (Tissue:root)	0.069

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.019
SRR9715739	Root	0.017
SRR9715742	Root	0.077
SRR9715743	Root	0.038

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.144
SRR8749028	MeJA induced 9h	0.152
SRR8749029	MeJA induced 9h	0.015
SRR8749030	Uninduced	0.341
SRR8749031	Uninduced	0.257
SRR8749032	Uninduced	0.135

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.426
SRR8400027	Control-Root	0.360