Gene detail information of Glyur000669s00020842.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G61790.13.00E-133Protein with RING/U-box and TRAF-like domains
NRKEH18636.10ubiquitin ligase SINAT3 [Medicago truncatula]
Swissprottr|Q8S3N1|SINA5_ARATH1.00E-168E3 ubiquitin-protein ligase SINAT5
trEMBLtr|A0A072TN38|A0A072TN38_MEDTR0E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006691804621424+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04506SIAH1 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
MAPK signaling pathway - flymap04013
Wnt signaling pathwaymap04310
p53 signaling pathwaymap04115


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0007275  multicellular organism development

GO:0016567  protein ubiquitination


cellular_component

GO:0005634  nucleus


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005515  protein binding

GO:0008270  zinc ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000669s00020842.1PF03145.11Sina912731.10E-56


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control34.813
SRR1783600control34.934
SRR1783602moderate drought stress24.859
SRR1811619moderate drought stress23.901

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.212
DRR006520Root Summer glycyrrhizin high producing strain30.326
DRR006521Root Winter glycyrrhizin high producing strain15.409
DRR006522Root Winter glycyrrhizin high producing strain14.213
DRR006523Root Summer glycyrrhizin low producing strain30.159
DRR006524Root Summer glycyrrhizin low producing strain29.620
DRR006525Leaf Summer glycyrrhizin high producing strain12.320
DRR006526Leaf Summer glycyrrhizin high producing strain12.411

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)29.930
SRR2868004Drought Stress(Tissue:root)32.732
SRR2967015Control (Tissue:root)30.997

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.147
SRR9715740Leave14.970
SRR9715741Leave14.802
SRR9715739Root10.325
SRR9715742Root23.965
SRR9715743Root20.610

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.451
SRR8749028MeJA induced 9h20.508
SRR8749029MeJA induced 9h15.468
SRR8749030Uninduced12.757
SRR8749031Uninduced11.199
SRR8749032Uninduced8.132

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root41.858
SRR8400027Control-Root44.714

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved