Gene detail information of Glyur000669s00020854.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61730.1 | 9.00E-96 | reduced male fertility |
| NR | XP_003548418.1 | 0 | PREDICTED: probable F-box protein At3g61730-like [Glycine max] |
| Swissprot | tr|Q9M365|FB331_ARATH | 9.00E-117 | Probable F-box protein At3g61730 |
| trEMBL | tr|V7ARL3|V7ARL3_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW07248.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00669 | 86659 | 90021 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.019 |
| SRR1783600 | control | 0.852 |
| SRR1783602 | moderate drought stress | 0.323 |
| SRR1811619 | moderate drought stress | 0.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.241 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.241 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.173 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.593 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.332 |
| SRR2967015 | Control (Tissue:root) | 0.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.799 |
| SRR9715740 | Leave | 0.192 |
| SRR9715741 | Leave | 0.597 |
| SRR9715739 | Root | 0.124 |
| SRR9715742 | Root | 0.317 |
| SRR9715743 | Root | 0.353 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.173 |
| SRR8749028 | MeJA induced 9h | 0.183 |
| SRR8749029 | MeJA induced 9h | 0.141 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.091 |
| SRR8749032 | Uninduced | 0.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.543 |
| SRR8400027 | Control-Root | 0.616 |