Gene detail information of Glyur000669s00020855.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46495.1 | 5.00E-75 | RING/U-box superfamily protein |
| NR | XP_004510676.1 | 0 | PREDICTED: putative RING-H2 finger protein ATL21A-like [Cicer arietinum] |
| Swissprot | tr|P0CH01|AT21A_ARATH | 8.00E-98 | Putative RING-H2 finger protein ATL21A (Precursor) |
| trEMBL | tr|G8A2W4|G8A2W4_MEDTR | 0 | RING-H2 finger protein ATL21A, putative {ECO:0000313|EMBL:KEH18667.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00669 | 90996 | 94964 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000669s00020855.1 | PF13947.1 | GUB_WAK_bind | 21 | 91 | 3.80E-07 |
| Glyur000669s00020855.1 | PF13639.1 | zf-RING_2 | 326 | 368 | 7.40E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.761 |
| SRR1783600 | control | 1.684 |
| SRR1783602 | moderate drought stress | 2.109 |
| SRR1811619 | moderate drought stress | 2.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.546 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.595 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.015 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.056 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.286 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.286 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.468 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 27.751 |
| SRR2868004 | Drought Stress(Tissue:root) | 44.316 |
| SRR2967015 | Control (Tissue:root) | 47.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.620 |
| SRR9715740 | Leave | 0.942 |
| SRR9715741 | Leave | 1.952 |
| SRR9715739 | Root | 0.990 |
| SRR9715742 | Root | 0.915 |
| SRR9715743 | Root | 0.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.530 |
| SRR8749028 | MeJA induced 9h | 15.888 |
| SRR8749029 | MeJA induced 9h | 4.113 |
| SRR8749030 | Uninduced | 8.301 |
| SRR8749031 | Uninduced | 30.266 |
| SRR8749032 | Uninduced | 13.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.380 |
| SRR8400027 | Control-Root | 6.711 |