Gene detail information of Glyur000670s00020731.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G58620.11.00E-157zinc finger (CCCH-type) family protein
NRXP_003539330.10PREDICTED: zinc finger CCCH domain-containing protein 66-like [Glycine max]
Swissprottr|Q9LUZ4|C3H66_ARATH0Zinc finger CCCH domain-containing protein 66
trEMBLtr|I1LLK7|I1LLK7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G27130.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0067035316657+


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000670s00020731.1PF12796.2Ank_2651633.70E-09
Glyur000670s00020731.1PF00642.19zf-CCCH2973178.30E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.443
SRR1783600control10.462
SRR1783602moderate drought stress7.839
SRR1811619moderate drought stress7.976

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.620
DRR006520Root Summer glycyrrhizin high producing strain14.076
DRR006521Root Winter glycyrrhizin high producing strain9.073
DRR006522Root Winter glycyrrhizin high producing strain8.248
DRR006523Root Summer glycyrrhizin low producing strain25.917
DRR006524Root Summer glycyrrhizin low producing strain25.507
DRR006525Leaf Summer glycyrrhizin high producing strain10.845
DRR006526Leaf Summer glycyrrhizin high producing strain10.602

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.749
SRR2868004Drought Stress(Tissue:root)26.961
SRR2967015Control (Tissue:root)33.886

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.329
SRR9715740Leave18.344
SRR9715741Leave20.726
SRR9715739Root39.650
SRR9715742Root47.617
SRR9715743Root41.430

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.180
SRR8749028MeJA induced 9h34.398
SRR8749029MeJA induced 9h9.764
SRR8749030Uninduced25.275
SRR8749031Uninduced4.909
SRR8749032Uninduced5.487

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.860
SRR8400027Control-Root15.760

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved