Gene detail information of Glyur000670s00020748.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G47300.20ribonuclease Ps
NRXP_003545725.10PREDICTED: uncharacterized protein LOC100788705 [Glycine max]
trEMBLtr|I1MI98|I1MI98_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G29980.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00670110445117630-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01164POP1 EC:3.1.26.5 RNA transport map03013
Ribosome biogenesis in eukaryotesmap03008


Gene Ontology

biological_process

GO:0001682  tRNA 5'-leader removal

GO:0006396  RNA processing


molecular_function

GO:0004526  ribonuclease P activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000670s00020748.1PF06978.6POP1231802.90E-21
Glyur000670s00020748.1PF08170.7POPLD4985732.10E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.759
SRR1783600control3.792
SRR1783602moderate drought stress4.575
SRR1811619moderate drought stress4.610

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.827
DRR006520Root Summer glycyrrhizin high producing strain6.852
DRR006521Root Winter glycyrrhizin high producing strain11.221
DRR006522Root Winter glycyrrhizin high producing strain10.824
DRR006523Root Summer glycyrrhizin low producing strain4.693
DRR006524Root Summer glycyrrhizin low producing strain4.914
DRR006525Leaf Summer glycyrrhizin high producing strain2.470
DRR006526Leaf Summer glycyrrhizin high producing strain2.518

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.896
SRR2868004Drought Stress(Tissue:root)6.138
SRR2967015Control (Tissue:root)7.459

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.070
SRR9715740Leave5.784
SRR9715741Leave3.619
SRR9715739Root3.740
SRR9715742Root7.262
SRR9715743Root6.406

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.789
SRR8749028MeJA induced 9h10.451
SRR8749029MeJA induced 9h5.184
SRR8749030Uninduced1.648
SRR8749031Uninduced1.067
SRR8749032Uninduced0.822

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.857
SRR8400027Control-Root8.431

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved