Gene detail information of Glyur000671s00022538.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G04620.10coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family
NRXP_003535971.10PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Glycine max]
COGYP_007131148.11.00E-143coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Stanieria cyanosphaera PCC 7437]
Swissprottr|Q8GS60|HCAR_ARATH07-hydroxymethyl chlorophyll a reductase, chloroplastic (Precursor)
trEMBLtr|I1LAL9|I1LAL9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G25710.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006716813875721-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K18010HCAR EC:1.17.7.2 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000671s00022538.3PF04422.8FrhB_FdhB_N1071835.20E-23
Glyur000671s00022538.3PF04432.8FrhB_FdhB_C2173897.30E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.413
SRR1783600control1.370
SRR1783602moderate drought stress2.577
SRR1811619moderate drought stress2.616

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.534
DRR006520Root Summer glycyrrhizin high producing strain2.514
DRR006521Root Winter glycyrrhizin high producing strain10.965
DRR006522Root Winter glycyrrhizin high producing strain10.245
DRR006523Root Summer glycyrrhizin low producing strain1.454
DRR006524Root Summer glycyrrhizin low producing strain1.433
DRR006525Leaf Summer glycyrrhizin high producing strain27.847
DRR006526Leaf Summer glycyrrhizin high producing strain27.181

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.414
SRR2868004Drought Stress(Tissue:root)18.736
SRR2967015Control (Tissue:root)22.833

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave43.066
SRR9715740Leave60.485
SRR9715741Leave37.349
SRR9715739Root1.134
SRR9715742Root2.013
SRR9715743Root1.774

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.378
SRR8749028MeJA induced 9h7.534
SRR8749029MeJA induced 9h3.840
SRR8749030Uninduced2.368
SRR8749031Uninduced0.335
SRR8749032Uninduced2.088

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.799
SRR8400027Control-Root14.031

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved