Gene detail information of Glyur000672s00022915.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G31180.20Class II aminoacyl-tRNA and biotin synthetases superfamily protein
NRXP_004498802.10PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cicer arietinum]
COGYP_006705440.15.00E-115aspartate--tRNA ligase [Cardinium endosymbiont cEper1 of Encarsia pergandiella]
Swissprottr|O48593|SYNO_ARATH4.00E-29Asparagine--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBLtr|I1M984|I1M984_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G11711.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00672715311163+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01876DARS, aspS EC:6.1.1.12 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006422  aspartyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004815  aspartate-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000672s00022915.1PF01336.20tRNA_anti-codon951794.80E-07
Glyur000672s00022915.1PF00152.15tRNA-synt_22175371.10E-77


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control48.606
SRR1783600control49.064
SRR1783602moderate drought stress27.984
SRR1811619moderate drought stress27.964

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain61.632
DRR006520Root Summer glycyrrhizin high producing strain61.985
DRR006521Root Winter glycyrrhizin high producing strain132.206
DRR006522Root Winter glycyrrhizin high producing strain129.431
DRR006523Root Summer glycyrrhizin low producing strain42.522
DRR006524Root Summer glycyrrhizin low producing strain42.294
DRR006525Leaf Summer glycyrrhizin high producing strain28.699
DRR006526Leaf Summer glycyrrhizin high producing strain28.667

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)89.907
SRR2868004Drought Stress(Tissue:root)67.000
SRR2967015Control (Tissue:root)58.798

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave51.047
SRR9715740Leave47.492
SRR9715741Leave54.525
SRR9715739Root42.628
SRR9715742Root69.941
SRR9715743Root68.734

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h94.371
SRR8749028MeJA induced 9h193.028
SRR8749029MeJA induced 9h257.907
SRR8749030Uninduced48.066
SRR8749031Uninduced97.414
SRR8749032Uninduced121.684

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root73.901
SRR8400027Control-Root82.521

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved