Gene detail information of Glyur000672s00022923.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G31810.1 | 1.00E-166 | ATP-dependent caseinolytic (Clp) protease/crotonase family protein |
| NR | XP_004498810.1 | 0 | PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial-like [Cicer arietinum] |
| COG | YP_005031564.1 | 7.00E-67 | putative enoyl-CoA hydratase/isomerase [Azospirillum brasilense Sp245] |
| Swissprot | tr|Q8RXN4|HIBC5_ARATH | 0 | 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial (Precursor) |
| trEMBL | tr|G7I876|G7I876_MEDTR | 0 | Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:AES59108.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00672 | 44084 | 50405 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K05605 | HIBCH | EC:3.1.2.4 | Carbon metabolism | map01200 |
| Propanoate metabolism | map00640 | |||
| Valine, leucine and isoleucine degradation | map00280 | |||
| beta-Alanine metabolism | map00410 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000672s00022923.1 | PF00378.15 | ECH | 58 | 197 | 2.20E-19 |
| Glyur000672s00022923.1 | PF13766.1 | ECH_C | 268 | 384 | 5.00E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.984 |
| SRR1783600 | control | 7.684 |
| SRR1783602 | moderate drought stress | 5.633 |
| SRR1811619 | moderate drought stress | 5.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.932 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.702 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.700 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.840 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.103 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.636 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.926 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.410 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.047 |
| SRR2967015 | Control (Tissue:root) | 9.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.810 |
| SRR9715740 | Leave | 4.979 |
| SRR9715741 | Leave | 5.875 |
| SRR9715739 | Root | 4.368 |
| SRR9715742 | Root | 5.552 |
| SRR9715743 | Root | 5.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.352 |
| SRR8749028 | MeJA induced 9h | 20.246 |
| SRR8749029 | MeJA induced 9h | 23.801 |
| SRR8749030 | Uninduced | 4.800 |
| SRR8749031 | Uninduced | 1.265 |
| SRR8749032 | Uninduced | 3.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.738 |
| SRR8400027 | Control-Root | 10.069 |