Gene detail information of Glyur000672s00022924.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G10870.1 | 4.00E-75 | chorismate mutase 2 |
NR | AES59089.2 | 6.97E-158 | chorismate mutase [Medicago truncatula] |
Swissprot | tr|Q9S7H4|CM2_ARATH | 6.00E-109 | Chorismate mutase 2 |
trEMBL | tr|G7I7N5|G7I7N5_MEDTR | 3.00E-158 | Chorismate mutase {ECO:0000313|EMBL:AES59089.2} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00672 | 50682 | 53419 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K01850 | E5.4.99.5 | EC:5.4.99.5 | Biosynthesis of amino acids | map01230 |
Phenylalanine, tyrosine and tryptophan biosynthesis | map00400 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
-- | -- | -- | -- | -- |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 10.771 |
SRR1783600 | control | 11.121 |
SRR1783602 | moderate drought stress | 2.730 |
SRR1811619 | moderate drought stress | 2.831 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 4.648 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 4.594 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.287 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.333 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 8.812 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 8.217 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.867 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.237 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 22.736 |
SRR2868004 | Drought Stress(Tissue:root) | 26.063 |
SRR2967015 | Control (Tissue:root) | 15.764 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 36.180 |
SRR9715740 | Leave | 29.335 |
SRR9715741 | Leave | 40.113 |
SRR9715739 | Root | 4.143 |
SRR9715742 | Root | 8.644 |
SRR9715743 | Root | 9.777 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 74.307 |
SRR8749028 | MeJA induced 9h | 86.325 |
SRR8749029 | MeJA induced 9h | 149.714 |
SRR8749030 | Uninduced | 3.785 |
SRR8749031 | Uninduced | 13.103 |
SRR8749032 | Uninduced | 9.379 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 12.975 |
SRR8400027 | Control-Root | 21.737 |