Gene detail information of Glyur000672s00022924.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G10870.14.00E-75chorismate mutase 2
NRAES59089.26.97E-158chorismate mutase [Medicago truncatula]
Swissprottr|Q9S7H4|CM2_ARATH6.00E-109Chorismate mutase 2
trEMBLtr|G7I7N5|G7I7N5_MEDTR3.00E-158Chorismate mutase {ECO:0000313|EMBL:AES59089.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006725068253419-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01850E5.4.99.5 EC:5.4.99.5 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0009073  aromatic amino acid family biosynthetic process

GO:0046417  chorismate metabolic process


molecular_function

GO:0004106  chorismate mutase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
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Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.771
SRR1783600control11.121
SRR1783602moderate drought stress2.730
SRR1811619moderate drought stress2.831

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.648
DRR006520Root Summer glycyrrhizin high producing strain4.594
DRR006521Root Winter glycyrrhizin high producing strain0.287
DRR006522Root Winter glycyrrhizin high producing strain0.333
DRR006523Root Summer glycyrrhizin low producing strain8.812
DRR006524Root Summer glycyrrhizin low producing strain8.217
DRR006525Leaf Summer glycyrrhizin high producing strain20.867
DRR006526Leaf Summer glycyrrhizin high producing strain21.237

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.736
SRR2868004Drought Stress(Tissue:root)26.063
SRR2967015Control (Tissue:root)15.764

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.180
SRR9715740Leave29.335
SRR9715741Leave40.113
SRR9715739Root4.143
SRR9715742Root8.644
SRR9715743Root9.777

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h74.307
SRR8749028MeJA induced 9h86.325
SRR8749029MeJA induced 9h149.714
SRR8749030Uninduced3.785
SRR8749031Uninduced13.103
SRR8749032Uninduced9.379

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.975
SRR8400027Control-Root21.737