Gene detail information of Glyur000672s00022930.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G25150.10TBP-associated factor 5
NRXP_003549326.10PREDICTED: transcription initiation factor TFIID subunit 5-like isoform X1 [Glycine max]
COGYP_007100486.12.00E-50WD-40 repeat-containing protein [Chroococcidiopsis thermalis PCC 7203]
Swissprottr|Q6S7B0|TAF5_ARATH0Transcription initiation factor TFIID subunit 5
trEMBLtr|K7MNC1|K7MNC1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G33880.4}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00672117740127999+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0005515  protein binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000672s00022930.1PF04494.10TFIID_90kDa1031926.20E-29
Glyur000672s00022930.1PF00400.27WD403774070.017
Glyur000672s00022930.1PF00400.27WD404444763.60E-10
Glyur000672s00022930.1PF00400.27WD404865181.80E-10
Glyur000672s00022930.1PF00400.27WD405235609.80E-13
Glyur000672s00022930.1PF00400.27WD405646021.30E-10
Glyur000672s00022930.1PF00400.27WD406066439.90E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.486
SRR1783600control19.738
SRR1783602moderate drought stress22.537
SRR1811619moderate drought stress22.436

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.706
DRR006520Root Summer glycyrrhizin high producing strain16.439
DRR006521Root Winter glycyrrhizin high producing strain34.739
DRR006522Root Winter glycyrrhizin high producing strain33.889
DRR006523Root Summer glycyrrhizin low producing strain13.493
DRR006524Root Summer glycyrrhizin low producing strain13.034
DRR006525Leaf Summer glycyrrhizin high producing strain14.181
DRR006526Leaf Summer glycyrrhizin high producing strain13.815

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.737
SRR2868004Drought Stress(Tissue:root)21.491
SRR2967015Control (Tissue:root)23.779

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.791
SRR9715740Leave11.513
SRR9715741Leave11.587
SRR9715739Root2.750
SRR9715742Root10.046
SRR9715743Root7.942

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h34.574
SRR8749028MeJA induced 9h43.483
SRR8749029MeJA induced 9h32.760
SRR8749030Uninduced13.889
SRR8749031Uninduced6.693
SRR8749032Uninduced6.588

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root32.479
SRR8400027Control-Root29.507

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved